Reproducible Research

Under construction

Messy folder: är alla modeller och tables och .lst-filer etc i samma mapp då? Vad om undermappar till tex ”pk”, en för ”base model” och en annan undermapp för ”covariate model”?

• Naming
  • Name folders using only A-Z, a-z, 0-9, -, _.
  • Start folder names with a number for sorting purposes.
• Alltid MU-reference, ifall det behövs em-metoder
  • Testa alla estimeringsmetoder?
• Scripta alla plottar
• Rmarkdown scriptad rapport
  • R.version
  • rstudioapi::versionInfo()
  • .packages()
  • devtools::session_info(pkgs = “attached”)
• Use git
  • Do not track (messy) model development in git
    • git history becomes too messy otherwise
    • Use rsync if needed
  • Track the Rmd-file for the report
    • This tracks the models. The models are still in the “messy” folder.
      • base_model <- run25.mod
      • covariate_model <- run63.mod
      • final_model <- run67.mod
      • simulation_model <- run68.mod
    • Runrecord
      • runno
      • based on
      • ofv
      • dofv
      • condition number (CN)
  • Do not track produced PDFs in git

Folder structure: * model * pk * .mod * pd * .mod * report * 1a * .tex * .pdf * 1b * .tex * .pdf * 1 * .tex * .pdf * data * raw_data * dat1.R * dat1.csv * dat2.R * dat2.csv * presentation * slides.pptx